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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031812 Open in IMG/M |
| Scaffold ID | Ga0308411_10012405 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5116 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004307 | Metagenome / Metatranscriptome | 444 | Y |
| F005028 | Metagenome / Metatranscriptome | 414 | Y |
| F008499 | Metagenome / Metatranscriptome | 332 | Y |
| F018115 | Metagenome / Metatranscriptome | 236 | Y |
| F025895 | Metagenome / Metatranscriptome | 199 | Y |
| F032180 | Metagenome / Metatranscriptome | 180 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308411_100124053 | F004307 | AGGA | MFKELISNGNHSERPELNGAYVGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVVDPELDAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQNAVGREYQLTLETKPSGWVEIVHIAPVRARLRKMKEDEIPF |
| Ga0308411_100124054 | F008499 | GGA | MKSRSKNEPRWKRKERGVLKALQATFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGNDPGFVVEVKARKRMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE |
| Ga0308411_100124055 | F018115 | AGGAG | MNDAEERFVRRYAHLAADASLDRHAARALLRRALTDREALAEYLLNNECTPALLGEFINRHWNAALSDALDSAALRLTLRVMHAVWRIEDARDRRAVLVCFRRGIIPNTKIMRRLCGVVRNA |
| Ga0308411_100124056 | F005028 | GGTGG | MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQEVAALMLHVGYRPTFIRYFLRYHIPALNESAAVGETYTDPDAADAHLGLCWRLDEDVLTVYTDLHRAAKRLKQPYRDLAAVCLRWGYVHETVVQLLAKELERKHRNVVED |
| Ga0308411_100124057 | F032180 | AGGA | MWWKIEEIPHQELEEWTHAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLIERWVRGKRGWTLYE |
| Ga0308411_100124058 | F025895 | GGGGG | MNDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWASGVRGFPAVVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVDIWQRSGLFAPLPDVIEGAAAVLVKVGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |