NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10012593

Scaffold Ga0308411_10012593


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10012593 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5068
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023603Metagenome / Metatranscriptome209N
F024322Metagenome / Metatranscriptome206N
F038584Metagenome / Metatranscriptome165Y
F044249Metagenome / Metatranscriptome154N
F054062Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100125932F054062N/AMGKLRELSWKDFCDGLDKDPPDDVQKEAEHVFFDHVFPEALLAFFQNASELLLLYEAALSAPAMKPIADAKFNELFKQNPIPFYESLIPALKNLGAEPEKATFLEICAFLTTYKS
Ga0308411_100125933F023603N/AMLYTTADFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPDSVEKIYAALPSSAPAVGVRNVLRDLALPFIFGRIKMGVGSSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFAPFVVQAELATPTATIPYPSPIPQVPDFVAVGDPVRAYTTSGDVQTSVVSVTATDITLAVALPAGPVRLIVENLRIRISRAYLTF
Ga0308411_100125935F038584N/AMTEEIKQIQKAGEELLATLHATAAAEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRSARKLMQRYVQKTTVGTNTPREYIGEAFYVTRQLVIEFVQDYLRTETLDILAEITQVRVNPFTGAPAIVGEGQPKPEMPTTPERVTSNYQKIAFSDVITDEVLLAYPDIVDFLIWHGAYRLEVFLHNALVTLLSGIASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWLANAAIVPFPYYWTLVFGALKSTTGEYLQLDRQLQGLTLIPVGAAQTARTVVFNENELEVFFLGDITVNFGRVLDAAFETNVRRLSMDLFYAPLPHTGRPVIVANTQNAINSMAQ
Ga0308411_100125937F044249AGGCGGMTKRDALLALLGASLTIVAKKYVMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGTARLVFYLIFYVALLVALEQIASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLIKVFRHEPPEKAS
Ga0308411_100125938F024322GAGVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFVREYDVSTYAFPFSAEERVAFHPPPIFVAHYNEFSQIAARQRDAFLAVIPDARMGKSEWGEVEHEAFFFAPAQDTEEFEVQLERLAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
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