NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10013615

Scaffold Ga0308411_10013615


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10013615 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4820
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032563Metagenome / Metatranscriptome179Y
F054491Metagenome / Metatranscriptome139N
F070747Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100136155F032563GAGMTDKRLMELFSAYKRSTDLIVKIWEQDIRGYTGTDYIFEIERQYPGCTLAVRAVKRELEQMNIPIYAVYVGAKSNVILIEIKTDKKKAEKINREFKQKIPVSGWLVVEYEHREDGTEERRSQIESA
Ga0308411_100136156F070747GGTGGMSIEKTERKSDVRKLNQLSARITLLDKKRRKALEQLVNQFCDLYGIAKSRRIDVMKTEEEHRGAICAVLFAIDELSRRDIAVKRVYWDKYGGLLIRLADAKLNEVKIDEEIKKLAKQRKKQDCGWFIV
Ga0308411_100136158F054491AGGAGMNELRSGVTYKWVAERSAWCTGCGCNNYATGQCVRVDNSRIVLGLKERIEVVAGTPHRFSTAMLSYCKSEQAAQEAIQKGLARPVTQADFHRPLMLAY
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Institute for Fundamental Biomedical Research
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