NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10015248

Scaffold Ga0308411_10015248


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10015248 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4481
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F040512Metagenome / Metatranscriptome161N
F054645Metagenome / Metatranscriptome139Y
F068330Metagenome / Metatranscriptome124N
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100152482F068330AGGAGMNDKLMKKLSQLAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLVAHGVMACQPSPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSTYIVSMASRSPVNGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFIAIKSNIQHQIERRQKNNRYDYFDLIVWAVFGIVVSVYLILINSFVVRYTAGINDSGALLSLVVSLYGMSPTVLLAGLAALTVLTKVVDRETAPKSGTRLDEQFATNGVANRQGVKM
Ga0308411_100152483F076974AGGMDHVKRRRGRPRKPATLEIDEFFAVLELLVENAKRHRMLESVLVTEGKLKVAFCVPLFGVTERLLSLKRDRLAESQSPEQLRMPL
Ga0308411_100152484F040512GAGMFDLLANATVAGLSVVSARVLEQYNWFQRLAPETKRLIAVATAAFIALTMHMISAIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0308411_100152486F008994GAGGMRVTRFAIDENGRALFPDYFIVDDNTRLALAMYSANINVQAIVDEGLAQTPWLSTQWPGRTVSFNEWRDAFARNGHSFPQYHAQIGERVRLSELVNINRAFVELFMNGVDLTDPLNAQTHRELLTERNVDLFDFLK
Ga0308411_100152487F054645AGGAGGMSCGCQTTSSNCVREPFNANFVRPLTYVRGVDANGCVSYAPATSFNLGVQDTSTIDLTLTGGVLSAQVIVSPNAGNALQALPNGLYVGAGAYSLSNCAGNPLPAGTRVLTCPTGPSALNVNDQLIASNPPGTTLRTLSPKNCPEPANNDYIIIADNTGNVRYTRMSEAVSYNLTAGNTIVFPNIPLVTLQPPNTNTGIIDSASFTNPRSCFSVFVKGNITALLQHSFNQDNSLSVAVAQISNLRSLISRIDNYNTPGITNTPLTGHAWRNQTIDAGVFSAERIVDLGTGIAPGVTATFNREVQMLGATNFYYLTVENWNASFSVIAL
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