NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10018405

Scaffold Ga0308411_10018405


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10018405 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3946
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F031016Metagenome / Metatranscriptome183Y
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100184054F031016AGGAGGMAVITIWEGERRVVCGNEYEFVKYVEFEGAELGSSWEEENSRGTQTTFYQTNDGRIVAHVVRWSRWEGEATHAYIYVFPSMGGVNGAAAMFWRELRKAGLIPPLTVGLDE
Ga0308411_100184055F002982GGAGGVKIQFERHPHAICVVLTDTGECDRIITVARASDAIDALALDIHTAALKPLDALFALPRVVCVEIEQRSGGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308411_100184057F087842AGGMALIWIWAGYVAAGDARVYLITFDGERIGGVDERNAQRTFYATADGRVVVHEVRIGRRRGGITYDQSLVYVFSDLAQACAHLAVNPQHIDPTRGEATLPDVDAPTLTPDEWARGVGSY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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