NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10020194

Scaffold Ga0308411_10020194


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10020194 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3717
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F031513Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100201941F031513N/AVYADSGIVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVMGVLLPAVFAYFTWAQVASLQALVAQILALVGDK
Ga0308411_100201943F004024AGGAMPSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYERIAPVIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308411_100201945F002229GAGGMVTLLTLDGVEDVDYVPSDLEIRASLDDAGLYGMVLNGVTWMRLASGAGWWTVICNRRVTATLAAIGWCWVADGLGARGYWSPALACVPAEVRAMCGDGCVDDDDEED
Ga0308411_100201946F008135AGGAGGMRAMNDSRTERALTEAGAGIARVLDARQRHAVALAIEACWYIVAALPPDGSVTFGDVVRLLRWFARGFNEGVEVDDVDG
Ga0308411_100201947F002795GGAGGMSTGNRLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGESVICTVDGYDVFVDSPDYARGEMVELPARLQFARDSSGRPVVKLYVDEGVR
Ga0308411_100201948F002372AGGAGMPTRREDALWSVVHRRSSHLRALLDTLDDIDVGVTYELDYYPYAIVELLRVREHAPPLVLRSVYVQANRQWEYHSEFTLRVVEAALQLVQEYHADPSLGGAEAWA
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