NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10028599

Scaffold Ga0308411_10028599


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10028599 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2911
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009254Metagenome / Metatranscriptome320N
F013065Metagenome / Metatranscriptome274N
F080093Metagenome / Metatranscriptome115N
F096802Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100285992F096802GGCGGMALCVRYLHRHPLELSHLPATAVVDLLALAAVEAELLADAEPL
Ga0308411_100285994F013065N/AMARRIARDATIAIQLGGVDDGSAITWGAATQIEGKCSEISIDYRSQSVNLAGLSDAYARMRSAGAAEYTIRIRAFIPTDSYDFYASGNPPLHYRARVRIKPRSTLQTDAEYTGVITKWSWSAQAGQEQIEEIEIVGPLDV
Ga0308411_100285995F009254N/AMRLCDIEAHLRNFLARVVGAPIVDAPAQLPVGSSVAGVLSLQSREAGKAVGGMRAVYQLELLASDAIPDAQRHRLYETLASQIIRTELAAERDWLPMLDYQVFLEELSIERLRVRLEVEWDAH
Ga0308411_100285996F080093GGAGGMRTEKPQPRVRVRTHATPTLTPAWGLHEQLYHPLVQSVLHILRELVASGGVRLVGDAPDEERELFARLTRTRGYTGAVRHLATAHVAGVSVVEILWDEVYMPSELRPVPPEAAQLGLDESGEIVSVRVNTSAGQQDLPITHAVVVSAAPAW
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