NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10034778

Scaffold Ga0308411_10034778


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10034778 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2518
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F076715Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100347782F004307AGGAMFKELISNGNHSERPELNGAYVGRFLGVKERQRPTFETRHNPEPTLEDVFVFEFEVEDDDGNPLRVSKWVRKPARLTHPGKSGKVTNLYRVLSALYGVSVMTDAQLERAEEFIQEAIGREYQLTLETKPSGWCEIVHIAPVRARRKEKPVDEVPF
Ga0308411_100347783F008499AGGAGLTKCRSRTEPRWKRKEREAVKALQATFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKHMLTKPTLDALLQTIDRAARFDRIPLFVLVFGDDVPQRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308411_100347784F018115AGGAGMSDEKERYIRWYAHLPAHVPLDRHATRALLRRALANREELAEYLLKQECSPALLGEFFFRHWNDAISDAPSSAALRLASAVMRALERIEDERDRRAAEWWFRLGLVPSVRVLRQLCARINDAR
Ga0308411_100347785F005028GAGGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRATYIRYFLRYHVAHTDPETGGEDVVLAVADLHTAAKRLRQPYRDLAAVCLRWGYVHETVVRLLAKTLERKAKNVVED
Ga0308411_100347786F076715AGGAMWWKIEEVPHQELEEWASAVYSCERKAKRDPATRAAGVFVMFVREGETRPEYAPGDKAPEGAYLVGRWTLKPP
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