NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308411_10039078

Scaffold Ga0308411_10039078


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10039078 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2301
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F035322Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100390781F014738GGAGGMKLDVLLLISAFALAFVHPNAAQVAATAVLVLLTVRIERGRRARKKKSAPVAH
Ga0308411_100390782F007404AGGAGMDIVEIFQLLAAGHVGLSARDYLWNAIFGAIGATTAYLADKEGVVLLPRYDKEQHSVELGALGRVLVGAGAGVLVGYSGYIPFVAGVVAPTLLPALIDKIAWFVERRRR
Ga0308411_100390785F035322N/ARVFGQYPGYLADHLTATTTILSLENRRQLAWRVASVGEYENKPLAEARRNEAAVALDRQIAPLTIDLDNSRYELMTREGVTVPNWAADVSDYAIVSGYYRNAKITSRVITRERTTYTVSFNPDDFVTALR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.