NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10039436

Scaffold Ga0308411_10039436


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10039436 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2286
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F026013Metagenome / Metatranscriptome199Y
F040512Metagenome / Metatranscriptome161N
F057955Metagenome / Metatranscriptome135N
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100394361F026013N/AIVSPSAGNALQVLPNGLYVGAGAYSLSDCAGNPLPVGTQVLTCPTGPSALNINDQLIASNLPGTALRTLSSKNCPEPTNNDYIIIADNTGNVRYTRMSEAVFHRVNPNLIVFPNIPLVTLQPPSTTTGTIDSAAFTNLRNCFNVFSKGDMFALLQHSFNQNNATSQAVARIGNLRDLISRIENYNTPGITNTPLTGHAWRNQTVVADGFSHERWIDLGFGITPGSTIAFDRALFQTDATNFYYVTVGNWSARFNILAL
Ga0308411_100394362F008994GAGGMRVTRFAIDNNGRALFPDYFIIDDNTRLALAMYSANINVQAIVDEGLAQTPWLSTQWPGRTVSFDEWRDAFARNGHSFPQYHAQIGERVRLSELVDINRAFVELFMNGVNLTDPLNAQTHRELLTEQNVDLDDFLK
Ga0308411_100394363F057955GGAMIDLIEFFTTYGVLGVVALISMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKNVTEKMDELLRDIGRLIDKAETTIEELEKAKSLRRDV
Ga0308411_100394364F040512GAGMFDLLANVTVAGLSVVSARVLEQYNWFQRLAPETKRLIAVAIAAFIALAMHMIGTIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0308411_100394365F076974AGGMDHVKRRRGRPRKPATLEIDEFFAVLELLVKNAKRHHMLESVLVTEGKLKVAFCVPLFGVTERLLSPKRDRLAESQSPTQLRMPL
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