NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10044650

Scaffold Ga0308411_10044650


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10044650 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2080
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100446502F015735GAGGMVVYHHWSVEWHPRDNPPHGLPRVVCIARRAVSDPFAGLGPFPADVDRAVRFWNLVASGGARDYGAGYEVVWRLSVVADDADGDAPSGDWSDDPVYRARRRLLRWIMRSQCPIPALADHFAVEHFRDHPEYFGLLPDSGA
Ga0308411_100446503F002372AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSFSGAEGV
Ga0308411_100446504F002795GGAGGMATNSDGRLVLRGMVASYREFISRKDGKVYRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFLRDSSGKPVVRLYVDEGVR
Ga0308411_100446505F008135AGGAGGMRAMNDPRTERVLAEAGASIARVLDDRQRHAVALALEVCWYIAAALPPDDELTFGDVVRLLRWFARGFNEGVEVGDGDE
Ga0308411_100446506F002229GGAGGMVTLLTFDGVEDVDYTPSDAEIRASLDDRALYGMVLGGVTWMRLVSGAGWWTVVCNRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRALCGCAEDEDGDDEE
Ga0308411_100446507F098761N/AVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDALVERYRFALRLDAWYGVYDTLYGAAPGDTLAILPAPAPAPAPAIARRRG
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