NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10046870

Scaffold Ga0308411_10046870


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10046870 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2004
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009254Metagenome / Metatranscriptome320N
F013065Metagenome / Metatranscriptome274N
F096802Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100468702F096802GGCGGMTLCVRYLHRHPLELTHLPATAIADLLALAAVEAELLTDAEPL
Ga0308411_100468704F013065N/AMARRTARDATIAVQLGGVDDGSAITWGTATQIEGKCSEISIDYRTQGVNLAGLSDAYARMRSAGAAEYTIRIRAFIPTDSFDFYASGNPPLHYRARVRIKPRSTLQTDAEYTGVITKWSWSAQAGQEQIEEIEIVGPLDV
Ga0308411_100468705F009254N/AMQLRDLEAYLRNFLARVIGAPIVSVPTELPVGSSVAGVLSLQSRETGKAIGGMRAVYQLEVLASDAMPDAERRRLYETLASQIIRTELAAERDWLPMLDYQVFLEELSIERLRVRLEVEWDAD
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