NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10054673

Scaffold Ga0308411_10054673


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10054673 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1778
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F076715Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100546731F018115N/AERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLNNECAPSLLGEFIFRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSARILCRLCEEINDA
Ga0308411_100546732F005028AGGAGMRDDDLRAAMLFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTFIRYFLRYHVPTLRESVEVGETYTDPGAADAHLGLCWRLDENVVAALSDLHAAAKRLRQPYRDLAEVCLRWGYVHETVVQMLAKALERK
Ga0308411_100546734F076715GAGGMWWKIEPIPHQELEDWERALLRCENRAKRDPMSRAAGVFVIFVREGGTRPEYAPGRDIPDGAYLVGKWTLKKKGWVWYD
Ga0308411_100546735F025895GGTGGMTDLIAWIIAGGVILALVNSNVADGLLSALDISDNLKRAADWASGVRGAPALAATICFSILAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDIRMLQWMVYFFIFFDIVTDYTEAVALVDVWRRGGLFAPLPDVLEGAAVVLTKIGWTFAASFAFEFLAVLLALTAL
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