NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10084167

Scaffold Ga0308411_10084167


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10084167 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100841671F022362GGAMIASLLDAVVDALNGPPPAASVAASKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEVVRARPYVDASSIETVVNDAHSIASRLTNQEVLERSGIAYAFESISFSDPLYEIEEVFDESSFVRASVTARYAVLEPL
Ga0308411_100841673F013092N/AMNAILNDFFKTLLRSRGVRLRLPNGSEIDAVVARRDSQSVSLGGQVAADTTTQCFVVRASDLPAGYWPRVADEIVNVATSQRYIVVRAIGGAHATTSSDPYGFLVRVWTRLAS
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