NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10162300

Scaffold Ga0308411_10162300


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10162300 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)782
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011548Metagenome / Metatranscriptome289Y
F020180Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_101623001F011548GGAGGMVVISGVELVQSDRLLWAAQRGSERLRLIADAGVEVRRVGERVYVAHALPMPATRTMRLMPETKYRTLYHLRIDDSYRFGVTPADAQLWSDSIGGIYERGYAAAQMSIIRPPAYVSVVRKRALVYQLRYIALLPDGGVR
Ga0308411_101623002F020180GGAGMSYDAKRWYITRCSCTTPILYQERDRYPLRCAKCGGHVYTEPRSPHFERLTPTPIVDFRAIVRVLGWCVLGLLGYILMCVYFIVLGGL
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Institute for Fundamental Biomedical Research
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