NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307473_10031172

Scaffold Ga0307473_10031172


Overview

Basic Information
Taxon OID3300031820 Open in IMG/M
Scaffold IDGa0307473_10031172 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2324
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002079Metagenome / Metatranscriptome596Y
F044949Metagenome153Y
F047202Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0307473_100311721F047202N/AEKIDTGPALALGETEISSIVAAGGGRYVGVLKEIPHKMESIVLFSSPQTRTTLGLPISRLTAEAVREHLAESDAAFAGAGAK
Ga0307473_100311722F044949AGGMTNADGAGIVLEYRFRDSFCFHIRLAELLGTEMPRLIERLKIFHGEIVSVSEPRFRR
Ga0307473_100311723F002079AGGCGGMAADKASTMWVPVCCGRVMRCNMFRQSDGGTYAALVCVLCNKNITLEQEPLAAADKFGEGSNILSLIGSPKPPKTERRKSLTEAGPDDPTL
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