NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000019

Scaffold Ga0307478_10000019


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000019 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)252166
Total Scaffold Genes233 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)169 (72.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002337Metagenome / Metatranscriptome569Y
F003629Metagenome / Metatranscriptome476Y
F006705Metagenome / Metatranscriptome366Y
F023149Metagenome / Metatranscriptome211Y
F025539Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_10000019114F002337GGAGMNLAIIIVIAAVLALATILSVAVTQSLQARRSTNLAVAIRPIDIEAFRNLIDPAEDDYLRRRLQPSQFRRVRRERLRAMAAYVEIAGRNASVLVRIGEAARASGDVRVAGAAQQLVNDALLLRRNATVALARIYLALAWPNSGFAAARVVDRYEQLSGAAMLLGRLQNPAVPVRLSAMR
Ga0307478_10000019182F023149AGGAGMKKSYFIAVLTLTCLLGLGISAHAQDTEGVRVKVPFEFVAGSATLPAGTYTLGRLSVDAYSGLTISTFGHGAFVLPIAVDGTSAEQPKLSFEQVGGKYFLTKADTPGGIYTFALPRAMVGLTQVKDQGATSSGGAN
Ga0307478_10000019189F025539GGAGGMSSNVHTASPKNGWHPDLVASQSLQGDPGIGDPGIDDPVNDTGLGPRHCDLQVSGEFAS
Ga0307478_1000001969F006705GAGGMPYILEHLTSLRQEITDLRNMNARSAARNADSQIDQSAIEMRANRLAEIKKELSQMLNRPEDPAVWWEKGGRRNRVA
Ga0307478_1000001984F003629AGAAGMKLDPLLNRRVIFKLHGKEPLDSTIIKKDETGYWIRGGTLPPHLDHANCSQPENDVRYLEFTRIEWMRATRQRS
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Institute for Fundamental Biomedical Research
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