NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000718

Scaffold Ga0307478_10000718


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000718 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32398
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (92.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F026317Metagenome / Metatranscriptome198Y
F033374Metagenome / Metatranscriptome177Y
F070346Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_1000071810F033374GAGGMEPNWKPLVDKLGEEQSVGFMFMERVNGINLYKHGIARKYLNLDDSGCVCVCYEKWRFKKADFDDQLGKLEAVLAQLGETLQTVYDESYIEQKKKALQRFGIPYERIEIQPKDLSLN
Ga0307478_1000071816F070346GGAGMKRLFAMISPRWQRPLRFAAWGMFIVFVSVNLPFLFDLMSRGIAWIMGLFPHADELWKECPWCF
Ga0307478_1000071821F005419AGGAGGMVAAGATEAVGQGKGPEAVTSLRGTRKMRSGQTNGVEGQRFFLAKPGGSHGVPEFSKEFAGEPEAMVESLKTGLSYFVVSEWRGVADFSGKKPQLGREVVRSAPKAG
Ga0307478_1000071824F026317GGTGGMSLFVQLLEAIAVLVPDFLTLGLVTLAFFNLYSIARTLDIAGTLETDSALQVSLALGYLVTIAINIVGSLLTSARPTIATVIQSKSRVEQAGRESSPATLRPQPVRHEDAIIES
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Institute for Fundamental Biomedical Research
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