NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307478_10005705

Scaffold Ga0307478_10005705


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10005705 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8712
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001548Metagenome / Metatranscriptome673Y
F017174Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_100057054F017174AGGAGMYSWENPEDRLSIAQMNSELQHAQLELLSAHCATHQLRLRFSADDLARFGQRDILRKSVKSAAALSEYYSSIEKKIPAIEATSEPAPQATEEQIVEAVKRVSAYFKEQREHYLASAVPLSNHEKALMWPYFSAALLDRVRVVELKGARVPNPPFYEEYRAMGYVNLPEVTHMHSLTFLDLVVFNEKITERSLFHGLVHAVQFEILGLERYSEIFVRSFVQTKIHFSVPLEAHAFALDSKFAGTPTSRFSVEDQVRLWVDQGRY
Ga0307478_100057059F001548GAGGMFPVRVTLWTAAMAYTGFILTNQGLRTFNSLSITEAFLGALAGFFLAIMFTLREKRRQRPAFTAHSMAQFFPDWGTSREDGDSDR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.