NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10057422

Scaffold Ga0307478_10057422


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10057422 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2904
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001441Metagenome / Metatranscriptome694Y
F003875Metagenome / Metatranscriptome464Y
F013397Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_100574221F003875GAGMAWRKTGLFHPAAEILILTCDVCERDIGYEDGRRPHAHFRVSRHPNPGAIDDQEPAVIICSRECLRAFASNTPGPDRAVSFTDPRAPRGKPRS
Ga0307478_100574223F013397AGGAGVNHGAATRAAIRARLSQRALPHGALWRRSGEYAGGGLCDGCGERITSAQASYAVDFTPGVTPQSARFHRVCFEIWQDECQTPLPS
Ga0307478_100574224F001441AGGAGMNLSLSDAFARFGAKPSNRLRGLSAIATDGALVLNCSQAHFGHPSRGVLRYEDRLSGEAAGSRDTELLGRHLALARDGSLPVRMVVTFRAHNKSGSVSSSCHVRPDLIGKVTKFDGDHFIVDFTRPEVLRQVAASGRRR
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