NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10080772

Scaffold Ga0307478_10080772


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10080772 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2482
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F044385Metagenome154Y
F098478Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_100807723F006757N/AMRNLAVLPPIKSNARIALLNLATFQEISTDELIAMAQAVPGGTKVDIPDRLTAIVLLLRTRPLDSD
Ga0307478_100807724F044385AGGAGMLIRNNDGEVTGEMNVSITQEGTVIRTNTMYQNGHPVAQNISVRDSQGSVRTTNVIGGKILP
Ga0307478_100807725F098478GGAGGMSKAKNGKAVDVKKAAAGDKSEPNGSGKAETAKVVKIQTLTPANTKLVKRGFVKMFVDFVVKRGSVTTDDLAAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKAK
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