NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10517511

Scaffold Ga0307478_10517511


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10517511 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)995
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000739Metagenome / Metatranscriptome913Y
F051385Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_105175112F051385GAGGMYGNNWLRVSSGLALVVTAVIVVAQSLTKTEMANQLYYGTTLIAVFGYIFLTSRTKEEERDSPWWW
Ga0307478_105175113F000739GGAGMMMRVEIWLKGLVAAAISGAAGGVLTGLAAVGIDPQHFNLQTGIGATFRIGAAAALINAVIGVAAYLQKSPLPAE

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