NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307413_10063077

Scaffold Ga0307413_10063077


Overview

Basic Information
Taxon OID3300031824 Open in IMG/M
Scaffold IDGa0307413_10063077 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2296
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000271Metagenome / Metatranscriptome1408Y
F037082Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0307413_100630773F000271AGTAGMTMGGREGPLDRPMAESQLSELQNMRVLLEEARGLSRDLAYHRRARLESRIGEALEEVDQQIEDLRATKS
Ga0307413_100630774F037082N/ARILQVAALLLALGLIINLAVHGWLGAILEAAALFLALAIAVNLAVYGWLGAMGAWWSATEAHAGDRLVHLLIAGTFTALAAGVWYALSFEVRPFE

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