NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1002726

Scaffold Ga0308409_1002726


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1002726 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7322
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016816Metagenome / Metatranscriptome244Y
F029452Metagenome / Metatranscriptome188Y
F033055Metagenome / Metatranscriptome178Y
F050400Metagenome / Metatranscriptome145N
F092114Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308409_100272610F016816GGAGGMNTVYNPLTGQWERVDDLVRPYPVIARDTRLVGVNDTIAFTPSLGTSGAQNHTDIFGNTNALRANIGIAVGSTDADIVIPDPWRIRRFIVLCNRTASGGTAVTIACNVYGRLLAPDGTPTAWRTINNATDSVWVSGALRLVIPGPLGGVFGYDQYRIVFRRDPDSTPAPELSLVRVYAEF
Ga0308409_10027263F033055GGAMVYPNQVIQNDNWTTNTGIDILLALGENDGLYIYNTSAINLLHLGMPSEVVNCELRVRSDGLNPPLFLSFYLSGNIVGTISLFSTNNWETYTLTVDRWDSVVLEADFGGIIGVDFLRAEPYGGAPTKRTLTGVGI
Ga0308409_10027264F029452GGGGGMIYEYRCAECGWLTVAKRTVDQRDVAPRCERCGTLTKRVFPPRAQIVVPRAFQLECAREAGKLVLPQTEEEKRYWDTFGIVDGDGE
Ga0308409_10027265F092114N/AMRELLSVNRQKLNDLLGDNPPRRDTWLLKCRRLREIVSNLPANQIITTSIPEGHSNLLLININIKAHAIMQLIRGTVMDFKEDNDPYQMQFAEFLASNELALREAIMQRLVYGLGAVCVVGDKQKGWRLQSISPNDIWWDCTTGDVMQPIWIARGYRDSDNTDYREVWYVDVFHRYKVGGADVETQPNPYGVIPIVLFPALYVPDTVYPIGDVELACPQQFILDEIRRTYLNMARRGAGFYSVKRSSIEETELQRLQNPEEVYILVNEQDAIVPIPTPAPNPEWQALEALAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPSGTATPRALEDSLTSVNELMRADMVSNTADGAVGNNSIAESV
Ga0308409_10027268F050400GGGGGVITVELYNRYYQPVLERILEPARAVLLLTTDGVYTFTGITPAPLPHNYPITSAIASKHYALPTPTAPPYPSYRRAGRTIAVELCVDTAQSYTVQYLHNGTQQPPLTIPSLPLPDYPLYERSPIYPFAHNHLAGYSYDVRIVGSYQAGGMDIAIPNTHSGIITAVCIPLGDTTYLYSAYRNSSGEWKIIIRNPDGSELDSDTNVDTWLRVYVWSYYR
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