NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1003797

Scaffold Ga0308409_1003797


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1003797 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5780
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002978Metagenome / Metatranscriptome516Y
F009403Metagenome / Metatranscriptome318Y
F054900Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308409_100379710F002978AGGTGGVSVRDWRVTIVPWADRRLWFIQARRGRRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPASLPGTPPGAPGAPGA
Ga0308409_10037972F054900AGGAMISHGCANIGAMEYERAMLQLGVYCVTLVMLYVVDRWSRG
Ga0308409_10037975F009403AGGVFRITRRGRGSGRAPALSVVRSADGARLEVREGRYGQGACYAYCDVDDTLAAHTLLLTYADMRARVIYIHDPLPLVSERKFFDAFDSCSGCRPDSLPDAVALPDSLPDSDSGT
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