Scaffold Ga0308409

Basic Information
Taxon OID	3300031830 Open in IMG/M
Scaffold ID	Ga0308409_1013444 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2519
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2519

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004170	Metagenome / Metatranscriptome	450	Y
F069745	Metagenome / Metatranscriptome	123	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308409_10134442	F004170	GGAGG	MSDPSLFVSPLVRQAARNLHQLEVLTANPLWTNLFYRANFWRAWWVMAVTPDEATAWLPALAFAVSCEEDANVLAEFAWWPLSEPLPPEALPWRDRLIQVWEQYPAATTWKKTIRLFALVRLDRRAERLPEWLREARRALDLEPEDRHLRLAALAGWRPRPGDAPPHGGKAEAAQAWVRFWEKLYQHPGSQPDGLFAATALLHLTEAGWLPSGPSPERLREKFRQRVQQVQQWPVSYFERSVLRMLLSSVPADASAPERRQQDIRKWLELTHRNVQWEKREAVWDMLAAWQREGVLERCGIDREQLQELSLLPDLARTLEWEQHGEVLLAMMKYVPEAVEVSAHPEAARAVVAHWEALSRNGNWRIRPEAWVARWNLRRAGVLTAEEQTRFGADYVESIGVENDPDVLLALAQITPPGTFPLATWAGRLSDQNDRCRLAARLAIHGWLVEVMEGTNGEWRMASGSEASGEQRVASSELPLATHQSPLAIIRRQVRQVMRRAGQEGTDAGTVAPFVNLPPDVLPDFRRLHEIETALAAGQMPPPPDAAAENRVTPRAVPARLPEAHPRTDPPGITDRTTGRTAGSDPQARHPFPEVIRHE
Ga0308409_10134443	F069745	N/A	RRAAWVARWNLLRAGVLTAEEQERFGADYVEAIRSEDDRELLALAKITPPGTFPLAIWTRRLSDQNDRRRLAAHLAIHGWLVDIAGGGQRRQVRQVLRRAGQDIGDGTVAPFVNLPPEVWPDFRRLHEIETALAAGQMPPRPDAAAENRVTPRAIPARLPEPHPRTGPPSITDRTASRTAGSDPQARHPFPEVIRHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308409_1013444

Overview

Ecosystem & Geography

Associated Families

Sequences