NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1014560

Scaffold Ga0308409_1014560


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1014560 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2389
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F008499Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10145603F004307AGGAGMFRELIKKGSEERPELNGAYIARFEGVSLRERPTFETRNDPEPTYEEVFVFEFTIIDKELPPLRVAKWVRKPERLAHPGKNGKTSNLYKVLASLYGVTQMTDQQLEAAEEFVQNAIGRLFQLTIVTKPTGWYDILHIVPSRQRKKEVADVDETIPF
Ga0308409_10145604F008499AGGAGGLTKRSHSEPRWKRKEREVVAALQATFGRVSDPTLARLLTRSGRVGHLTRFGFDGIVGNDPGFIVEVKARKRMLTKPMINTILQTVDEAARFNRVPLVAVVFGDDVPKFTTSGVKVERIWALIPLNELKKLVGKEVYE
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