NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1021744

Scaffold Ga0308409_1021744


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1021744 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1831
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F067304Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10217441F002970N/AGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVNYIEDYVAQLRFAWLTRGDVQLLNVSGVVDIVRYGERAYEGAVITTRFAHLIRAPSV
Ga0308409_10217442F005302AGGAGGMSHSGVIDGLFAGNFAVEISTNTTTWTAVSNATVKIDDVELNRPSGEAFVGGSSDHATITVGKREPVELTLTFLYNEAANSAANTIFDRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITNVTLSTLDPSDPEPYVAMVTVRTPSLRQYTLGSSPTNLNPAP
Ga0308409_10217443F004791AGGAGGMTTPAEIYDIDTIRVDRSALSIRDAATVLNNELTAPVVARLVRKAIGDQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLVPAVDEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILDEPYAAAALLLKKIFDSVAEEGNE
Ga0308409_10217444F067304N/AMRRDQRLVPPLRAQRCEVLRHALQRQTVKRVGRAVVDVSAQHQFGVRCGQRRKVE
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