NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1028949

Scaffold Ga0308409_1028949


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1028949 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1513
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F054645Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10289491F008994GAGGMRVTRFAVDNNERALFPDYFIVDDNTRLALAMYSANINVQTIVDEGLALTPWLSTQWPGRTVSFNEWRDAFARNGHSFPQYHAQIGKQVRLSELVNINRAFVELFMNGVDLTDPLNAQTHRELLTERNVDLVD
Ga0308409_10289492F054645N/ATSSNCVREPFNANFVRPLQYVRGVDANGCVSYFPATSLTLLNVQDSNTLDLTLNAGVISGNVRISGTTGNQIQALANGLFVPVGAGLQIVDTNTVDLTLAGGVLSANVIVSPSAGNALQVLPNGLYVGAGAYSLSNCAGSPLPIGTQVLTCPSGSSALNVNDQLIASNAPGTALRTLSSKNCPEPANNDYIIIADNTGNVRYTPMREAINYNLTAGSPIVFPNLPLVTLQPPNTTTGIIDSASFTNPRSCFGVFVKGVVNGVFQHSFNQNNNFSVATARINFLRDLVSRIDNYNTPGITNTPLTGHAWRNQSISSTGFSAERVVDLGAGILPGTTATFNRELFTVGATNFYYVTIENWSASFSILAL
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