NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315290_10084790

Scaffold Ga0315290_10084790


Overview

Basic Information
Taxon OID3300031834 Open in IMG/M
Scaffold IDGa0315290_10084790 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2645
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045016Metagenome153N
F045053Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0315290_100847902F045016GGAMGKRPTRGNVRRGAGVGKKEAMTLAIAQPPGVTGASLVNAACRKYQEAVDKFKRVEAEWQTLPTQEAVMLVVETQGILRETRQLLDQGTSQMTGMNSPEWGEATGQNTRDEVAECLQDAHDLGNRVDDLLAGCDRLIEICLAHQEAYERYQTGKALGIVLAGAILTIGVALYFLLR
Ga0315290_100847905F045053N/AMTTVASYHIPGFGTVEVVQQNDGRNRFWDLFAASGECLNEGHPFWSKPRRKQVETFLAHDLKEALARIEKECERLKITQEDLDEVIHEAAQAGNRRLNQVSEEKQQERLITTAEEQAARVNNGGRASQLIYLLEAYGEAGSVKALQGRHETNG
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