NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315290_10358066

Scaffold Ga0315290_10358066


Overview

Basic Information
Taxon OID3300031834 Open in IMG/M
Scaffold IDGa0315290_10358066 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081502Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0315290_103580661F081502GGAGMKTHMHRLPLWLAISNPSSMNLKNLFVALAAGAVIAIAAGCGKSKEAPVGADAAPTGDQRTTDAGPAGHWEADIAGDGPQRIRVSLDLAKNAKSEWIASMGLPSDNKTGLVVSDVVVNGQSVKFVATELMSTPFDLTLGPDGSMKGTISRPSPQPVEFQRTGEAKVELIPASPAVPKELEGDWEGSLGSPNGGFRMAFHFKNQPDKTLVATFDTANATNLPLNDVKQTGQKVEFGMRIAHGTFQGTLNKEGTELAGQFTHDGSSSPLTLRKKAGQPPK
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