NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315290_10360561

Scaffold Ga0315290_10360561


Overview

Basic Information
Taxon OID3300031834 Open in IMG/M
Scaffold IDGa0315290_10360561 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1274
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008540Metagenome331Y
F011572Metagenome / Metatranscriptome289Y
F091195Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315290_103605611F091195GGAGGLNNQPLHFQFPAEPFQRWHVLYDSEAPFMMNFRHPRQPGEKPDPKLNFGPSELSARLEHAGVEYIRIALGKDKQAFDLAIAMLSLGLKVPDGSVWYPVIPWVRDDGFYAVGMREPLPYRDACHLFGFDIPAAKPSVPKRIKRDVARGRTSLFG
Ga0315290_103605612F008540GGAGGLRTFQPERALIARETREENRRELARMLAQIAQARAGRLPASPPVSLEARFQESVRKIREDVQLEKDVQTSYVLHWLRS
Ga0315290_103605613F011572AGGAGGMDTNRMFTCLFGGWLTAADKAAAATIHYTKSTVIPGFSDLTRKATLATGKTIVEVGYKLTDCCTTKSLPSCLQ
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