NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315290_10552330

Scaffold Ga0315290_10552330


Overview

Basic Information
Taxon OID3300031834 Open in IMG/M
Scaffold IDGa0315290_10552330 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1003
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F044439Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0315290_105523301F001872N/AAKAKAGIPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGSMFNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKNPKAGRKEALIFIDTLVANANELGLQCILDYFPEPHGRAWRCDRYAWLKYDKATIHGAPKGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA
Ga0315290_105523302F044439N/AMGRAHTFGEKMNYLAEKLIGLVLCTVFGITALTGAPSASGVPSGTIALAPISVQPYLIEPTTTTSSTIFIDPYLTACKQFSALAINLGWDPDQRTVLE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.