NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315290_11303053

Scaffold Ga0315290_11303053


Overview

Basic Information
Taxon OID3300031834 Open in IMG/M
Scaffold IDGa0315290_11303053 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005344Metagenome403Y

Sequences

Protein IDFamilyRBSSequence
Ga0315290_113030531F005344N/AGIRIQTRAGDIRNDLTIKYGTLSASEVSDTDQTSIGLYGDLAQIITTTIKHSADATSQAAFYLSLRAYPQPIFESITFALTNPELDNGDRDSLINAFMGQPINLTNLPLNMSSGAFQGFIEGWRFSASYNELSITLLLSPLAFSLQAMRWNDVPIVETWSSVSPTLTWEYATIVA
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