NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318517_10017216

Scaffold Ga0318517_10017216


Overview

Basic Information
Taxon OID3300031835 Open in IMG/M
Scaffold IDGa0318517_10017216 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2727
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019718Metagenome / Metatranscriptome228Y
F021694Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0318517_100172161F019718N/AFRGTSCFLIIVVCASIVSVSPVRAVGPAAEIADGIWTVQGRAIHGTRRCGDWLVRLTNARGQLSGVVSLARSSVPIQNLMLQPDGTFSGTTRAGLTGSRHARAYKVTGKFSGDTVSLTLKDSMCPPRSGTAIRQAGGA
Ga0318517_100172163F021694N/ALYDTTFWLFTLQSPFLMGKTQRAIELLSDERFVDLDTNLHYFERRYAAILAQHDERRDSMASVRGTRFRRVEGLYYDYIHIQRAEVQSMLNRIVAMPTTSEE
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