Scaffold Ga0307486_1089563

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307486_1089563

Scaffold Ga0307486_1089563

Overview

Basic Information
Taxon OID	3300031836 Open in IMG/M
Scaffold ID	Ga0307486_1089563 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 0.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	674
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.2944	Long. (^o)	-156.7154	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307486_10895631	F034190	N/A	LLTIPPERIVPTPLHLFLGIGNRIILEAFSELFGQECLQSALTSITTIHSAGCGGKSDLYDLNGPEISKFIKKECSTDILAAAGATTTITDSMKASHSLFSRWLQQLHHSLLHSGDWTPAHIDAWRTAVDDIQQHWQSEAHSKPFPKLHMLRHTVEFAERHRFLGRASESQTESCHATLNALFHKQHRNQSHNVSERLRRCLADASLRAVQPFLQQ

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