NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318511_10454694

Scaffold Ga0318511_10454694


Overview

Basic Information
Taxon OID3300031845 Open in IMG/M
Scaffold IDGa0318511_10454694 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)590
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036608Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0318511_104546941F036608N/ARIRGERSAPAPESGTFALRVLWTLPQAHQNFLFHEVRGLCRHYLRSKPEDASEINPEELVSEVWTKLIGSMTMPDPSDAAERSNFPDPSGWTIDPQVPENDGRVVWLIREIGGSRALAHRCEDIRRRRWGRATPGVGRPLVQPSELPAVETDPDEGGLGSADAVNIWRGVLITAERTFRPGDDVCRLLRMLAKVPG

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