NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10015049

Scaffold Ga0315320_10015049


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10015049 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6194
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F024812Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0315320_1001504912F024812AGGAGMPATKNNFSHITNVELEGVATSTFTVDFINTMAAETSDLSSGSATAGLEATRAVIGQFINILAEGPLADSGTQKTYTVRTDSLGTLISGNTLRDAIRALNGAGSVSATISGATVTATDLAILTAAVV
Ga0315320_100150495F000464N/AMKLSQQQKSRMYSHHDHDLDVEEEFWPIMGILLAILGVWTTFIHWIDWATLDVIPWWVEPFTIAPIVFLMIMKEHFDSLNPLHWWPMVWGYQAKLPDEDRITIRPLDTERIMQQHGGRLNVYIIDYQHIKFRRKKDAVIFGLRYF
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