NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307410_10232233

Scaffold Ga0307410_10232233


Overview

Basic Information
Taxon OID3300031852 Open in IMG/M
Scaffold IDGa0307410_10232233 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1425
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037602Metagenome / Metatranscriptome167N
F040839Metagenome161Y
F042771Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0307410_102322331F042771N/AFRPLQERGPMYSQRQEDLDLFSSHLEAKKSGPLVCPICNQTNTIVPKGAPIGEPSGEPIIESEPQYAYAACTNCGYSIFFDTDYLPSTRG
Ga0307410_102322332F037602GGAGGMAESGGLPSWVEAWVGKVVQVHVHGDPDPLFGVLEDWDRRGVVLRHTEDMVRLTASRVENVPSEPMMILVTWSAVRYVSVLLEELEEKD
Ga0307410_102322333F040839AGGAGMASRTTTAGGDYDLSDPVGSFVDVLRRVVFQPSAFFAGLPRQGSLLSPLVFALVCTEISVLLVGLLTFLDVPGGVTWLFGARGN
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