NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10000485

Scaffold Ga0315909_10000485


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10000485 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53332
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (23.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019126Metagenome / Metatranscriptome231Y
F031852Metagenome181Y
F035632Metagenome / Metatranscriptome171Y
F075718Metagenome118Y
F095001Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000048519F031852N/AMNIYIGDQAKKLFYMREVPVGSIGVFQSHVGEWLYWYSDGFTYDTGFADTEAEALQISKKNFRPYKK
Ga0315909_1000048540F075718N/AMKPFEINTTAYDEENFVILTDLNETQIKKVIEPIVNREREDGIYYDNDMLIDALLDAYPENKFYYYNEPKLISI
Ga0315909_1000048548F095001N/AMKAVIHMRGIYGGTFSQTKEFKDDKHLDNWLSWMDKNQNRVKVIGTKIL
Ga0315909_1000048558F035632N/AMEKFLSIPVTNEQRQLLSATGIVLIEQESTTTVHVHYKASTGTDVVTITHAAAPAGNESMRDAIQNAVVSALTTSWTYVAFEVENLPFAVSGITIA
Ga0315909_1000048571F019126N/AMAQKVTKTNAELLELVKALNITPAEKGSKAEAKLKKIAEKIKPLFEQYHEKREDIRLDNAHTESNGVLDLNEKGEYKFTKDGIKAMAKDMKALLDDTFEFYQFTFSSEGIESFKFLAGWVESIEAEQSAEEVE
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