NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10001356

Scaffold Ga0315909_10001356


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10001356 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33095
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (72.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027417Metagenome194Y
F044984Metagenome / Metatranscriptome153Y
F082391Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000135622F044984GGAGGMIDDAQRRMATAARKTIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIADEKQGKNWISIDGSTVLSMGVHTRATGADDLARTSNEGTNEGNDGGKA
Ga0315909_1000135627F027417GAGGMNYDYRVTFVTDYLTITTNVCLELDDTTGNLSDEAYGRAAVKGMSNIEDEIGKINESIINDITVTLILDDEEVELDVL
Ga0315909_1000135638F082391GGAGGVDDKEIKVPRSVHFADFLVVLAGLVHNISSSIHTATEELMEIAVYNANRNSEVNKVWEQFSNDLEKIQEDTDGR
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