NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10001969

Scaffold Ga0315909_10001969


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10001969 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26982
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017819Metagenome / Metatranscriptome238Y
F038210Metagenome / Metatranscriptome166N
F054562Metagenome139Y
F098638Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000196911F098638AGGAGMSQAEREKIEAEYFGMGKVGQKYHAPAAWGPSAWRKTMKYWAALALGIVLGAIAAGVLAVVVGVVR
Ga0315909_1000196924F038210GGAGVVALAVDLLHNVGMKIEANIPLPGGVDHRERYPFPDMLVGDSFLVLDATWIKNLRSAAYMYSRRHPGTRFTCRRYGEGWRLWRVA
Ga0315909_1000196937F054562GGTGGMSARLRLVQLVHLPDVGRVRVAWSATWSEYQVRALAADGQLAGEYFTADRADALATADVMLAGLALGAGMPA
Ga0315909_100019694F017819N/AMKKRSKYRPRTVLLNPMEYVLSGMRAVRDLPGVYLNVQLKNRAALEQIRLGTATRADVDMLIGAFNITEALAMNGHGKDWMQEIKQGQDALLELSRRGVARGMQFIMKAQEWEALKVVMDLHEEQLAHCTVMDIERAHDAVQKVVAQGKARAVVQTRKEEA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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