NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10003082

Scaffold Ga0315909_10003082


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10003082 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20617
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F010835Metagenome / Metatranscriptome298N
F013879Metagenome / Metatranscriptome267N
F029732Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100030821F001272N/AGCFGCSDGMITIELTTEQANQLLQLIDIAIKAGGFQNAKVGVPLADLIIAAAQPKPE
Ga0315909_1000308230F029732N/AMKYRSKTNQNLTVEYISEAQLRIGETKRLCVVYERGGYFYVRPKAEFHDKFSLDEGPKPS
Ga0315909_100030828F013879GGAGMRPKITVDKSRFDRAWSRYVLLTGRSMADVVNSRTFFLMLRLYCLLPPKSPQASRNKILDYLNRPVGVRKKDKKTGKFLGRSRELRVVHLIAQARNKKAGNEGLYGPTMREAAASLRRRAAGSVGYLKSCVVKAIKKLSPSFTQFGGTRRARKGSAGVKIIAGNQALINLANQYGLPKENVSVHRGSSAYAYKAKTGQHTYSMVKMNLGLADNQMGKVGSIYAKAMNQAYNDEAKELEDHIKAKLEEVSGVLEENGITVQ
Ga0315909_100030829F010835GGAMNGVALRTERALVDWLSAQDWSASPLGTPACLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNAGEYDPSGGFVAYFATPTDFGMNDTSERSRTFSRSMRIFAAANAITT
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