NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10005368

Scaffold Ga0315909_10005368


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10005368 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14772
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (76.74%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F012013Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000536835F012013N/AMKGQRRMAELDLQEQTRRDDVYRDLNEIIDRVTKLPVFPSLMWVWAFDIMKEIFDNYQIKDLAVNDYVDEGVPEGITLKQIFDKFWADVDGFGLSMDSGGDIIEETIRDWMRDNDFLVSLEEESDE
Ga0315909_1000536840F000450AGGAMGNRANFVFVDGAGDSIVLYGHWAGHQMLGKLADAVIAARPRWNDESYATRIAISNLIGDQWNMETGWGLQVNSIGDNEHKIAVINWKEQTFSLHADDDHRNLDNKVLGMKNEAIFTMDLSAFCEKYALEQLLAI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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