NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10005967

Scaffold Ga0315909_10005967


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10005967 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13858
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (29.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001807Metagenome / Metatranscriptome631Y
F003601Metagenome / Metatranscriptome477Y
F019817Metagenome227Y
F027818Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000596714F019817N/AMQATAVPNLSINQRNIYMYFLNHRKKYGKVPCFVPKCTTQVSRLDQYLQALNKLEQYGLIRVERCSNNYTGWIMTEPKSL
Ga0315909_1000596722F001807GAGMTVLAIEDTQFTDTHVTVTAVVDEMRLLYHATHLDPEEWAPALCKTTVELDPEEPIPLDEDGFCAYLNQLDPQWQLVDKDDFDLD
Ga0315909_1000596724F003601AGGAMSDYTDDQLLAMAMANIGEYITDNSPQYILIDEDPRNEDDYDTWDVGMEPIPGDQTWKSTAIDVESTEVK
Ga0315909_100059678F027818N/AMFSNTIVGNICYMEKAIHEGREFLAISMVVNDMYEGTCRIKFNNANGLMTAYNNGTLVVGQQLILTQFDVRLSSIRTHYFKDGDLVALKYPEMALTRVRAVIGSAPRPKVQPEVTAPKVEPTLEEIPF
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