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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10006804 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12858 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001805 | Metagenome / Metatranscriptome | 631 | Y |
| F008811 | Metagenome / Metatranscriptome | 327 | N |
| F012447 | Metagenome | 280 | Y |
| F013987 | Metagenome | 266 | Y |
| F014609 | Metagenome | 261 | Y |
| F023328 | Metagenome | 210 | N |
| F030061 | Metagenome | 186 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000680411 | F012447 | GAG | MAKAIQLVKVDKDYRGLLRAFSKMDDIAKKDMKQIASALAERGANYAKGAANNAPYNVKQARAVADSIKISKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYERIRDAWKAGL |
| Ga0315909_1000680413 | F008811 | AGG | MATTILSGRSLTLTIATKNYSEQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDINFLNDAGKSPDSLYKALWDATESAPDTALAFVLTLTTGVTLTGTVLPQYPPITASGADAQTCSVSLQVVGIPSEDLTA |
| Ga0315909_1000680414 | F030061 | AGTAGG | MPLSTLRADLKTAITSNSNYSCYDHVPDIIIPPACLILASDPYLEPMVIGNSKNYYVRLTLEVVSTTYSNPSALKNLEDDIETILGLLPTTWIILSVSSPRIRSTNSTDLLTAEIQLQTAYTG |
| Ga0315909_1000680419 | F013987 | N/A | LLSLRKSLKRRSNYLKGLIVMIKEEKHRILPALDRAHEEALRQGIISDLDAAGMAMAFTLAGVLDGGTLKPIEEVKYMAQLQQILDKYGLSLFGRKEKPELEVGEDPLEALRQLRTETTDHTNSQPN |
| Ga0315909_100068043 | F014609 | N/A | MKMTMRTIFTIQIGMRVSRMINELIGIIGLLITVLILVIKATVEITKMKSQLFPNSGSSLNDKVTRLQIEVTKIRSTIDSINTQLGKPKRKR |
| Ga0315909_100068047 | F001805 | AGG | MKMATEKIYIQIDNDKIELTGADKEAFIADRKATADAQALLETEYKAKQKAREDAIKKLADVAGLTEAELNAIL |
| Ga0315909_100068049 | F023328 | N/A | MTVYTPTYRVTIAGVVQTSVILSGGTITYGRNDFFEPTQPSYCNIELLNLDGASPVVELLDTVLIEVTDSTGAYVKLFTGEVSGVYNSFNGAGLGGEPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIQRILEETLFVAWEDLSNTLTWNDFTTETWANYGVQGIDTIDAGRYEVLARSPEIDQASNLTDLTQQSGLGYLYDTADFEIGYADAERRSANYATNLIELDADLVNADIQTRLQTADITNSVIIQYDDPIAEEAAENDTSINNYGLLQEIRSTILAQQLDAQEQAVNFVNYRGTPRTSLEAISVNLANGAMTDTVRNDLLGVTMDTLLYLDNIPIGLIPEGYFEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNDVIQWQNLDNTTTWLDVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |