NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10007254

Scaffold Ga0315909_10007254


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10007254 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12399
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (35.71%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F010908Metagenome / Metatranscriptome297Y
F014228Metagenome264N
F015723Metagenome / Metatranscriptome252Y
F024249Metagenome206N
F025437Metagenome201N
F082108Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100072541F014228N/AMNGSTPLKLNPNRLVMWTILLTAILAVVSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLGLILVGAYIVKRWVDKLTE
Ga0315909_1000725410F025437GAGMQMRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLMYGDYQHYYKVACCVLEENPMACIDKPDFESLQVELNKLNEVVMELSKYKELYLTLKRTFDEF
Ga0315909_1000725416F024249N/AMIFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGFAHVADFYEYEMQITYVEESYNEDGYTNTTAYPTTSIYRDVPNLETSIYIKWMNWATQVASEE
Ga0315909_1000725423F082108N/AMLYIVTPCSRPQNLVRLKQHIPSYATWVVMMDANCDFKGATGASITHYSKRTGNAGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPHDLPNLRFEMTYEADGTFAQAASEQGTLICVEQYLCYYNALK
Ga0315909_100072544F009600N/AMRLSHTRQLTYKVVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLAKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIGKDTAEITFSGILVNS
Ga0315909_100072546F015723N/AMSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNSFGGGYTPSASSSAPKGNDERSLSIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASAAPASHTEHFANRNDPF
Ga0315909_100072549F010908GAGGMMQILSPFQKYECFAVDGVDYLVIDYTIIQDCDYNLVEWASEMKFKRLKDHKHYTMPISKIITNHQEGRAKLCKCK
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