NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10007679

Scaffold Ga0315909_10007679


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10007679 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11972
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004694Metagenome / Metatranscriptome427Y
F004740Metagenome425Y
F088772Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000767912F004694N/AMNTVIAISPVSVWTPAGTKSATQFACRYVNYVNGPAVADCQLLDAAGAEVATQLVNATEAQTAAWTDDEAFYKVLAQNAGLTPL
Ga0315909_1000767914F088772GAGMSLISFLASAAGGTILGGLTQVLGSAVGELKEWSASKRRIAEIAALKEKQIAIAEVEAFAKAVEGTVGSSYAPPPTAPSWQHGLLAIAAFSTQMVRPLMVAGACLYIWTRPADQLAGLQPEILTVSFACVYFWLGVRHQMSRSK
Ga0315909_100076796F004740N/AMAADNPFLDVDAATLATLKTKVLDAIQACLLNTSYSLNGKSVTRADLNTLNQMLGNIVDAIEYQNGNTTDTTFVSFTGN
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