NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10008270

Scaffold Ga0315909_10008270


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10008270 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11427
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F006463Metagenome / Metatranscriptome372N
F007860Metagenome / Metatranscriptome343Y
F009958Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000827010F001808N/AMGKLFILIISIFLYSCSAQYHLNKAIKKGFKCDETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIKYKNVYVPKTRIQLKREYKIKIKTIYKDKVVEKAEARAEGKKNRPKGNLNLLFVGVGIGLLLSYLWKYAKKSLI
Ga0315909_1000827014F009958N/AMKNRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDWDEVSEYAFIELEVEISQKWETETDDNLQPHVLGVRLLEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYHEL
Ga0315909_1000827015F006463N/AMTSGTIYEQMDWWQRQWRGSFDLGLYLEVCRIKKNEQIKFKEMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIILEIKQIEK
Ga0315909_100082707F007860AGGMKSNYLATAYFIAGFLTSFSLICQGTEPYTNLAGVTLFFYLTFSLTEALEDLGL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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