NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10009283

Scaffold Ga0315909_10009283


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10009283 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10653
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F015582Metagenome / Metatranscriptome253Y
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000928321F006181N/AMKKNLIHVLYLDEAVYSYVAINDMSVEDNLERVFAEWNHGSGMECKMFIESKKRSLSVNDIVCVNGTYYQCRPYGWKKVTVEYVNELEKELSQHPTRYAYGTWYALTEIMYGRRHDDNEALLEGVETV
Ga0315909_1000928322F082581N/AMNDITSNITATSTIKTSKVGRPAKALKLILNKSFTLKDIQTLNPDVKPITIRAAILRGLSKGKFTKLPRNVKSGKVGKPANIFINTKVYQASLNNLAKSKVTASVTAEPAVA
Ga0315909_1000928324F015582N/AMSDINPELVAEQAEDAKYLQELNHYVNTLSAPSAEAVALYRSKLSMLEDIHNEIRSKYPEFMPEYDPSMDAELNQALGKYQEHTYSLSSRDMSAEK
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